3BWR structure in UniLectin3D

Mol* PDB structure viewer

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Comments

SV40 VP1 complexed with GM1 pentasaccharide

Neu U, Woellner K, Gauglitz G, Stehle T Structural basis of GM1 ganglioside recognition by simian virus 40 Proc. Nat. Acad. Sci. USA 2008

Matching protein

P03087 in UniLectin

Available structures

1SVA : no ligand
3BWQ : no ligand
3BWR : bGal13bGalNAc14(aNeuAc23)bGal1

Related proteins
> 50% identity

Ligand

Glycan composition

IUPAC condensed

GlycoCT

RES
1b:x-dglc-HEX-1:5
2b:b-dgal-HEX-1:5
3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
4s:n-acetyl
5b:b-dgal-HEX-1:5
6s:n-acetyl
7b:b-dgal-HEX-1:5
LIN
1:1o(4+1)2d
2:2o(3+2)3d
3:3d(5+1)4n
4:2o(4+1)5d
5:5d(2+1)6n
6:5o(3+1)7d

PubMed DOI Glycan Array CFG RCSB.ORG PDBeGlyTouCan (glycan information)SwissModel (ligand interactions)Glyconnect and SugarBind glycan superstructure(s)Uniprot

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