SMTL ID : 1vbo.1 (1 other biounit)

Crystal structure of artocarpin-mannotriose complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

3 x MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose(Non-covalent)(Non-functional Binders)

MAN-MAN-MAN.1: 10 residues within 4Å: Chain A: G.14, G.15, L.89, A.90, T.91, T.93, G.137, D.138, L.139, D.141 No protein-ligand interaction detected (PLIP) MAN-MAN-MAN.2: 10 residues within 4Å: Chain B: G.14, G.15, L.89, A.90, T.91, T.93, G.137, D.138, L.139, D.141 No protein-ligand interaction detected (PLIP) MAN-MAN-MAN.3: 10 residues within 4Å: Chain C: G.14, G.15, L.89, A.90, T.91, T.93, G.137, D.138, L.139, D.141 No protein-ligand interaction detected (PLIP)

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.4: 9 residues within 4Å: Chain D: G.14, G.15, L.89, T.91, T.93, G.137, D.138, L.139, D.141 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.15, D:T.93, D:G.137, D:D.138, D:L.139, D:L.139 Water bridges: D:G.14

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Jeyaprakash, A.A. et al., Structural basis for the carbohydrate specificities of artocarpin: variation in the length of a loop as a strategy for generating ligand specificity. J.Mol.Biol. (2004)

Release Date

2004-06-15

Peptides

artocarpin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

artocarpin

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