SMTL ID : 1zgs.1

Parkia platycephala seed lectin in complex with 5-bromo-4-chloro-3-indolyl-a-D-mannose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

6 x XMM: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside(Non-covalent)

XMM.1: 8 residues within 4Å: Chain A: G.310, G.311, D.386, F.388, G.431, D.432, Y.433, D.435 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:D.386, A:F.388 Hydrogen bonds: A:G.311, A:G.431, A:D.432, A:Y.433, A:Y.433 Water bridges: A:G.311, A:D.312, A:D.435, A:D.435 XMM.2: 9 residues within 4Å: Chain A: A.163, G.164, D.165, F.239, S.281, G.282, Y.283, Y.284, D.286 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.164, A:D.165, A:D.165, A:D.165, A:Y.283, A:Y.284 pi-Stacking: A:Y.283, A:Y.283 Halogen bonds: A:D.165 XMM.3: 8 residues within 4Å: Chain A: G.15, G.16, R.60, V.92, G.136, Y.137, Y.138, D.140 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.137 Hydrogen bonds: A:G.16, A:G.136, A:Y.137, A:Y.138, A:Y.138 pi-Stacking: A:Y.137 XMM.4: 8 residues within 4Å: Chain B: G.15, G.16, R.60, V.92, G.136, Y.137, Y.138, D.140 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.137 Hydrogen bonds: B:G.16, B:G.136, B:Y.137, B:Y.138, B:Y.138 pi-Stacking: B:Y.137 XMM.5: 9 residues within 4Å: Chain B: A.163, G.164, D.165, F.239, S.281, G.282, Y.283, Y.284, D.286 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.164, B:D.165, B:D.165, B:D.165, B:G.282, B:Y.283, B:Y.284, B:Y.284 Water bridges: B:A.163, B:A.163 pi-Stacking: B:Y.283, B:Y.283 Halogen bonds: B:D.165 XMM.6: 8 residues within 4Å: Chain B: G.310, G.311, D.386, F.388, G.431, D.432, Y.433, D.435 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:D.386, B:F.388 Hydrogen bonds: B:G.311, B:G.431, B:D.432, B:Y.433, B:Y.433 Water bridges: B:G.310, B:D.312, B:D.435

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Gallego Del Sol, F. et al., The first crystal structure of a mimosoideae lectin reveals a novel quaternary arrangement of a widespread domain. J.Mol.Biol. (2005)

Release Date

2005-10-11

Peptides

Mannose/glucose-specific lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mannose/glucose-specific lectin

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