- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)
A2G.2: 10 residues within 4Å:- Chain A: G.24, R.25, D.26, N.61, R.63, W.83, H.84
- Chain C: D.55, Y.89
- Ligands: ACT.4
10 PLIP interactions:1 interactions with chain C, 9 interactions with chain A- Hydrogen bonds: C:D.55, A:G.24, A:D.26, A:D.26, A:N.61, A:R.63, A:W.83
- Water bridges: A:G.24
- Salt bridges: A:R.63, A:H.84
A2G.7: 10 residues within 4Å:- Chain A: D.55, Y.89
- Chain B: G.24, R.25, D.26, N.61, R.63, W.83, H.84
- Ligands: ACT.9
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:G.24, B:D.26, B:D.26, B:N.61, B:R.63, B:W.83, A:D.55
- Water bridges: B:G.24
- Salt bridges: B:R.63, B:H.84
A2G.12: 10 residues within 4Å:- Chain B: D.55, Y.89
- Chain C: G.24, R.25, D.26, N.61, R.63, W.83, H.84
- Ligands: ACT.14
10 PLIP interactions:9 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:G.24, C:D.26, C:D.26, C:N.61, C:R.63, C:W.83, B:D.55
- Water bridges: C:G.24
- Salt bridges: C:R.63, C:H.84
A2G.17: 10 residues within 4Å:- Chain D: G.24, R.25, D.26, N.61, R.63, W.83, H.84
- Chain E: D.55, Y.89
- Ligands: ACT.19
9 PLIP interactions:8 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:G.24, D:D.26, D:N.61, D:R.63, D:W.83, E:D.55
- Water bridges: D:G.24
- Salt bridges: D:R.63, D:H.84
A2G.22: 10 residues within 4Å:- Chain E: G.24, R.25, D.26, N.61, R.63, W.83, H.84
- Chain F: D.55, Y.89
- Ligands: ACT.24
9 PLIP interactions:8 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:G.24, E:D.26, E:N.61, E:R.63, E:W.83, F:D.55
- Water bridges: E:G.24
- Salt bridges: E:R.63, E:H.84
A2G.27: 10 residues within 4Å:- Chain D: D.55, Y.89
- Chain F: G.24, R.25, D.26, N.61, R.63, W.83, H.84
- Ligands: ACT.29
9 PLIP interactions:8 interactions with chain F, 1 interactions with chain D- Hydrogen bonds: F:G.24, F:D.26, F:N.61, F:R.63, F:W.83, D:D.55
- Water bridges: F:G.24
- Salt bridges: F:R.63, F:H.84
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: S.59, Q.60, N.61, R.63, N.85
- Chain C: Q.58
- Ligands: ACT.4
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:N.61, A:R.63, A:R.63, A:N.85, C:Q.58
GOL.8: 7 residues within 4Å:- Chain A: Q.58
- Chain B: S.59, Q.60, N.61, R.63, N.85
- Ligands: ACT.9
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:N.61, B:R.63, B:R.63, B:N.85, A:Q.58
GOL.13: 7 residues within 4Å:- Chain B: Q.58
- Chain C: S.59, Q.60, N.61, R.63, N.85
- Ligands: ACT.14
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain C- Hydrogen bonds: B:Q.58, C:N.61, C:R.63, C:R.63, C:N.85
GOL.18: 7 residues within 4Å:- Chain D: S.59, Q.60, N.61, R.63, N.85
- Chain E: Q.58
- Ligands: ACT.19
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:N.61, D:R.63, D:R.63, D:N.85, E:Q.58
GOL.23: 7 residues within 4Å:- Chain E: S.59, Q.60, N.61, R.63, N.85
- Chain F: Q.58
- Ligands: ACT.24
5 PLIP interactions:4 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:N.61, E:R.63, E:R.63, E:N.85, F:Q.58
GOL.28: 7 residues within 4Å:- Chain D: Q.58
- Chain F: S.59, Q.60, N.61, R.63, N.85
- Ligands: ACT.29
5 PLIP interactions:4 interactions with chain F, 1 interactions with chain D- Hydrogen bonds: F:N.61, F:R.63, F:R.63, F:N.85, D:Q.58
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 7 residues within 4Å:- Chain A: N.61, R.63, H.84, N.85
- Ligands: ZN.1, A2G.2, GOL.3
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.85
- Salt bridges: A:R.63, A:H.84
ACT.9: 7 residues within 4Å:- Chain B: N.61, R.63, H.84, N.85
- Ligands: ZN.6, A2G.7, GOL.8
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.85
- Salt bridges: B:R.63, B:H.84
ACT.14: 7 residues within 4Å:- Chain C: N.61, R.63, H.84, N.85
- Ligands: ZN.11, A2G.12, GOL.13
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.85
- Salt bridges: C:R.63, C:H.84
ACT.19: 7 residues within 4Å:- Chain D: N.61, R.63, H.84, N.85
- Ligands: ZN.16, A2G.17, GOL.18
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.85
- Salt bridges: D:R.63, D:H.84
ACT.24: 7 residues within 4Å:- Chain E: N.61, R.63, H.84, N.85
- Ligands: ZN.21, A2G.22, GOL.23
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:N.85
- Salt bridges: E:R.63, E:H.84
ACT.29: 7 residues within 4Å:- Chain F: N.61, R.63, H.84, N.85
- Ligands: ZN.26, A2G.27, GOL.28
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:N.85
- Salt bridges: F:R.63, F:H.84
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.5: 3 residues within 4Å:- Chain A: N.34, S.70, K.77
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.34, A:S.70
NAG.10: 3 residues within 4Å:- Chain B: N.34, S.70, K.77
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.34, B:S.70
NAG.15: 3 residues within 4Å:- Chain C: N.34, S.70, K.77
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.34, C:S.70
NAG.20: 3 residues within 4Å:- Chain D: N.34, S.70, K.77
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.34, D:S.70
NAG.25: 3 residues within 4Å:- Chain E: N.34, S.70, K.77
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:N.34, E:S.70
NAG.30: 3 residues within 4Å:- Chain F: N.34, S.70, K.77
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:N.34, F:S.70
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Sanchez, J.-F. et al., Biochemical and Structural Analysis of Helix Pomatia Agglutinin. A Hexameric Lectin with a Novel Fold. J.Biol.Chem. (2006)
- Release Date
- 2006-05-15
- Peptides
- HELIX POMATIA AGGLUTININ: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Sanchez, J.-F. et al., Biochemical and Structural Analysis of Helix Pomatia Agglutinin. A Hexameric Lectin with a Novel Fold. J.Biol.Chem. (2006)
- Release Date
- 2006-05-15
- Peptides
- HELIX POMATIA AGGLUTININ: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A