- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.78 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x BGC- GLA: alpha-D-galactopyranose-(1-6)-beta-D-glucopyranose(Non-covalent)
- 3 x GLA: alpha-D-galactopyranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.3: 4 residues within 4Å:- Chain A: D.123, Y.125, N.127, D.132
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.123, A:D.123, A:Y.125, A:D.132, H2O.2
CA.6: 4 residues within 4Å:- Chain B: D.123, Y.125, N.127, D.132
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.123, B:D.123, B:Y.125, B:D.132, H2O.7
CA.10: 4 residues within 4Å:- Chain C: D.123, Y.125, N.127, D.132
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.123, C:Y.125, C:D.132, H2O.11
CA.13: 4 residues within 4Å:- Chain D: D.123, Y.125, N.127, D.132
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.123, D:D.123, D:Y.125, H2O.16, H2O.16
- 4 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)
MN.4: 6 residues within 4Å:- Chain A: E.121, D.123, D.132, H.137, V.145, S.147
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.121, A:D.123, A:D.132, A:H.137, H2O.2
MN.7: 6 residues within 4Å:- Chain B: E.121, D.123, D.132, H.137, V.145, S.147
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.121, B:D.123, B:D.132, B:H.137
MN.11: 6 residues within 4Å:- Chain C: E.121, D.123, D.132, H.137, V.145, S.147
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:E.121, C:D.123, C:D.132, C:H.137
MN.14: 6 residues within 4Å:- Chain D: E.121, D.123, D.132, H.137, V.145, S.147
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.121, D:D.123, D:D.132, D:H.137, H2O.16
- 2 x SO4: SULFATE ION(Non-covalent)
SO4.8: 5 residues within 4Å:- Chain B: R.53, S.56, A.58, T.59, T.231
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.56, B:T.59
- Water bridges: B:R.53
- Salt bridges: B:R.53
SO4.12: 5 residues within 4Å:- Chain C: R.53, S.56, A.58, T.59, T.231
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:S.56
- Water bridges: C:R.53, C:T.59
- Salt bridges: C:R.53
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Natchiar, S.K. et al., Structural studies on peanut lectin complexed with disaccharides involving different linkages: further insights into the structure and interactions of the lectin. ACTA CRYSTALLOGR.,SECT.D (2006)
- Release Date
- 2006-11-07
- Peptides
- Galactose-binding lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.78 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x BGC- GLA: alpha-D-galactopyranose-(1-6)-beta-D-glucopyranose(Non-covalent)
- 3 x GLA: alpha-D-galactopyranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Natchiar, S.K. et al., Structural studies on peanut lectin complexed with disaccharides involving different linkages: further insights into the structure and interactions of the lectin. ACTA CRYSTALLOGR.,SECT.D (2006)
- Release Date
- 2006-11-07
- Peptides
- Galactose-binding lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D