- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.59 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GAL- NGA: 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-beta-D-galactopyranose(Non-covalent)(Non-functional Binders)
- 3 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)
CA.4: 4 residues within 4Å:- Chain A: D.165, D.204, D.247
- Chain B: Q.220
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.204, A:D.247, A:D.247, H2O.28, H2O.28
CA.8: 4 residues within 4Å:- Chain B: D.165, D.204, D.247
- Chain C: Q.220
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.204, B:D.247, B:D.247, H2O.41, H2O.41
CA.11: 4 residues within 4Å:- Chain A: Q.220
- Chain C: D.165, D.204, D.247
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.165, C:D.204, C:D.247, C:D.247, H2O.14
- 3 x SO4: SULFATE ION(Non-covalent)(Non-functional Binders)
SO4.5: 9 residues within 4Å:- Chain A: S.158, V.159, T.160
- Chain B: S.158, V.159, T.160
- Chain C: S.158, V.159, T.160
10 PLIP interactions:5 interactions with chain B, 2 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: B:S.158, B:S.158, B:T.160, B:T.160, A:T.160, C:T.160, C:T.160
- Water bridges: B:S.158, A:S.158, C:S.158
SO4.6: 4 residues within 4Å:- Chain B: R.105, V.110, T.111, H.122
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.111, B:T.111
- Salt bridges: B:R.105, B:H.122
SO4.9: 1 residues within 4Å:- Chain B: R.93
2 PLIP interactions:2 interactions with chain B- Water bridges: B:R.93
- Salt bridges: B:R.93
- 1 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)
- 3 x GOL: GLYCEROL(Non-covalent)(Non-functional Binders)
GOL.10: 7 residues within 4Å:- Chain A: A.12
- Chain B: R.19, V.63, R.93, W.101, A.134, H.136
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.19, B:H.136, A:A.12
GOL.12: 7 residues within 4Å:- Chain B: A.12
- Chain C: R.19, Y.61, R.93, W.101, A.134, H.136
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:R.19, C:R.93, C:H.136, B:A.12
- Water bridges: C:R.19
GOL.13: 6 residues within 4Å:- Chain C: Y.24, H.28, C.52, R.80, Q.85, H.143
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.80, C:Q.85
- Water bridges: C:R.80, C:R.80
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Mathieu, S. et al., Discoidin I from Dictyostelium Discoideum and Interactions with Oligosaccharides: Specificity, Affinity, Crystal Structures and Comparison with Discoidin II. J.Mol.Biol. (2010)
- Release Date
- 2010-05-26
- Peptides
- DISCOIDIN-1 SUBUNIT A: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.59 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GAL- NGA: 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-beta-D-galactopyranose(Non-covalent)(Non-functional Binders)
- 3 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)
- 3 x SO4: SULFATE ION(Non-covalent)(Non-functional Binders)
- 1 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)
- 3 x GOL: GLYCEROL(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Mathieu, S. et al., Discoidin I from Dictyostelium Discoideum and Interactions with Oligosaccharides: Specificity, Affinity, Crystal Structures and Comparison with Discoidin II. J.Mol.Biol. (2010)
- Release Date
- 2010-05-26
- Peptides
- DISCOIDIN-1 SUBUNIT A: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C