- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAG- GLA- GLC- RAM- NAG- GLC: alpha-L-rhamnopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)]alpha-D-galactopyranose-(1-3)-[alpha-D-glucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)(Non-covalent)
- 6 x NA: SODIUM ION(Non-functional Binders)(Non-covalent)
NA.2: 3 residues within 4Å:- Chain A: A.456, S.483, Q.485
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.456, A:Q.485
NA.3: 2 residues within 4Å:- Chain A: G.102
- Ligands: NAG-GLA-GLC-RAM-NAG-GLC.1
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.102
NA.6: 3 residues within 4Å:- Chain B: A.456, S.483, Q.485
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.456, B:Q.485
NA.7: 2 residues within 4Å:- Chain B: G.102
- Ligands: NAG-GLA-GLC-RAM-NAG-GLC.5
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.102
NA.10: 3 residues within 4Å:- Chain C: A.456, S.483, Q.485
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:A.456, C:Q.485
NA.11: 2 residues within 4Å:- Chain C: G.102
- Ligands: NAG-GLA-GLC-RAM-NAG-GLC.9
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:G.102
- 3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
TRS.4: 3 residues within 4Å:- Chain A: V.459, N.460, Y.488
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.460
- Water bridges: B:E.470
TRS.8: 3 residues within 4Å:- Chain B: V.459, N.460, Y.488
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:N.460
- Water bridges: C:E.470
TRS.12: 3 residues within 4Å:- Chain C: V.459, N.460, Y.488
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Water bridges: A:E.470
- Hydrogen bonds: C:N.460
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Broeker, N.K. et al., Single Amino Acid Exchange in Bacteriophage Hk620 Tailspike Protein Results in Thousand-Fold Increase of its Oligosaccharide Affinity. Glycobiology (2013)
- Release Date
- 2011-03-02
- Peptides
- TAIL SPIKE PROTEIN: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAG- GLA- GLC- RAM- NAG- GLC: alpha-L-rhamnopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)]alpha-D-galactopyranose-(1-3)-[alpha-D-glucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)(Non-covalent)
- 6 x NA: SODIUM ION(Non-functional Binders)(Non-covalent)
- 3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Broeker, N.K. et al., Single Amino Acid Exchange in Bacteriophage Hk620 Tailspike Protein Results in Thousand-Fold Increase of its Oligosaccharide Affinity. Glycobiology (2013)
- Release Date
- 2011-03-02
- Peptides
- TAIL SPIKE PROTEIN: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A