SMTL ID : 3cqo.1

Crystal structure of a f-lectin (fucolectin) from morone saxatilis (striped bass) serum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

homo-trimer

Ligands

6 x FUC: alpha-L-fucopyranose(Non-covalent)(Non-functional Binders)

FUC.1: 5 residues within 4Å: Chain A: F.37, H.44, R.71, C.74, R.78 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.37 Hydrogen bonds: A:R.71, A:R.78, A:R.78 Salt bridges: A:R.71 FUC.2: 6 residues within 4Å: Chain A: F.166, W.183, H.190, R.217, F.220, R.223 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.166, A:W.183 Hydrogen bonds: A:R.217, A:R.223, A:R.223 Salt bridges: A:R.217 FUC.8: 4 residues within 4Å: Chain B: F.37, H.44, R.71, R.78 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.37 Hydrogen bonds: B:R.71, B:R.78, B:R.78 Salt bridges: B:R.71 FUC.9: 6 residues within 4Å: Chain B: F.166, W.183, H.190, R.217, F.220, R.223 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.166, B:W.183 Hydrogen bonds: B:R.217, B:R.217, B:R.223, B:R.223 Salt bridges: B:R.217 FUC.12: 5 residues within 4Å: Chain C: F.37, H.44, R.71, C.74, R.78 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:F.37 Hydrogen bonds: C:R.71, C:R.78, C:R.78 Salt bridges: C:R.71 FUC.13: 6 residues within 4Å: Chain C: F.166, W.183, H.190, R.217, F.220, R.223 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:F.166, C:W.183 Hydrogen bonds: C:R.217, C:R.223, C:R.223 Salt bridges: C:R.217

6 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.3: 6 residues within 4Å: Chain A: N.27, D.30, N.32, S.41, C.139, E.140 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.30, A:N.32, A:S.41, A:S.41, A:C.139 CA.4: 6 residues within 4Å: Chain A: N.173, D.176, N.178, S.187, C.283, E.284 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.173, A:N.178, A:S.187, A:S.187, A:C.283 CA.10: 6 residues within 4Å: Chain B: N.27, D.30, N.32, S.41, C.139, E.140 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.27, B:D.30, B:N.32, B:C.139, B:E.140 CA.11: 6 residues within 4Å: Chain B: N.173, D.176, N.178, S.187, C.283, E.284 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.173, B:N.178, B:S.187, B:S.187, B:C.283 CA.14: 6 residues within 4Å: Chain C: N.27, D.30, N.32, S.41, C.139, E.140 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:N.27, C:D.30, C:N.32, C:S.41, C:C.139 CA.15: 6 residues within 4Å: Chain C: N.173, D.176, N.178, S.187, C.283, E.284 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:N.173, C:N.178, C:S.187, C:S.187, C:C.283

3 x CL: CHLORIDE ION(Non-covalent)

CL.5: 3 residues within 4Å: Chain A: R.17 Chain B: R.17 Chain C: R.17 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: K.11 Chain B: K.11 Chain C: K.11 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: K.159 Chain B: K.159 Chain C: K.159 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Bianchet, M.A. et al., Structure and specificity of a binary tandem domain F-lectin from striped bass (Morone saxatilis). J.Mol.Biol. (2010)

Release Date

2009-04-28

Peptides

FBP32: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

FBP32