- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x GLC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose(Post Translational Modification)
GLC-GAL-SIA.2: 11 residues within 4Å:- Chain A: Y.91, K.130, V.132, T.133, A.134, W.150, H.180, E.187, L.191, Q.223, G.225
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:E.187, A:Q.223, A:Q.223, A:Y.91, A:V.132, A:V.132, A:T.133, A:A.134, A:E.187, A:Q.223
- Water bridges: A:A.224, A:K.219, A:K.219, A:G.225
- Hydrophobic interactions: A:L.191
GLC-GAL-SIA.6: 11 residues within 4Å:- Chain C: Y.91, K.130, V.132, T.133, A.134, W.150, H.180, E.187, L.191, Q.223, G.225
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:E.187, C:E.187, C:Q.223, C:Q.223, C:V.132, C:V.132, C:A.134, C:E.187, C:Q.223
- Water bridges: C:A.224, C:K.219, C:K.219, C:G.225
- Hydrophobic interactions: C:L.191
GLC-GAL-SIA.10: 11 residues within 4Å:- Chain E: Y.91, K.130, V.132, T.133, A.134, W.150, H.180, E.187, L.191, Q.223, G.225
9 PLIP interactions:9 interactions with chain E- Hydrogen bonds: E:E.187, E:Q.223, E:Q.223, E:Y.91, E:V.132, E:V.132, E:T.133, E:A.134, E:E.187, E:Q.223
- Water bridges: E:A.224, E:K.219, E:K.219, E:G.225
- Hydrophobic interactions: E:L.191
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 1 residues within 4Å:- Chain A: N.11
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.11
NAG.4: 4 residues within 4Å:- Chain A: T.15, K.22, N.23, K.311
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:T.15
- Water bridges: A:K.22
NAG.7: 1 residues within 4Å:- Chain C: N.11
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.11
NAG.8: 4 residues within 4Å:- Chain C: T.15, K.22, N.23, K.311
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:T.15
- Water bridges: C:K.22
NAG.11: 1 residues within 4Å:- Chain E: N.11
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:N.11
NAG.12: 4 residues within 4Å:- Chain E: T.15, K.22, N.23, K.311
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:T.15
- Hydrogen bonds: E:T.15
- Water bridges: E:K.22
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Lin, T. et al., The hemagglutinin structure of an avian H1N1 influenza A virus. Virology (2009)
- Release Date
- 2009-08-11
- Peptides
- Hemagglutinin: ACE
Hemagglutinin HA2 chain: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x GLC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose(Post Translational Modification)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Lin, T. et al., The hemagglutinin structure of an avian H1N1 influenza A virus. Virology (2009)
- Release Date
- 2009-08-11
- Peptides
- Hemagglutinin: ACE
Hemagglutinin HA2 chain: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B