SMTL ID : 3i27.1 (1 other biounit)

Structure of bovine torovirus Hemagglutinin-Esterase in complex with receptor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.1: 3 residues within 4Å: Chain A: K.49, N.62, S.68 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 6 residues within 4Å: Chain B: T.28, K.49, N.62, S.68, Y.69, D.70 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.49

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: D.284, G.287, Q.288, F.297, N.299, K.300 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: N.329, P.340, L.341 Chain B: F.364 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.341, B:F.364 NAG-NAG.5: 6 residues within 4Å: Chain B: D.284, G.287, Q.288, F.297, N.299, K.300 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain A: M.34, N.308 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.308 NAG.7: 4 residues within 4Å: Chain A: V.207, S.208, T.241, N.243 1 PLIP interactions: 1 interactions with chain B Water bridges: B:T.219 NAG.8: 4 residues within 4Å: Chain B: H.12, F.15, L.327, N.329 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Langereis, M.A. et al., Structural basis for ligand and substrate recognition by torovirus hemagglutinin esterases. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-09-15

Peptides

Hemagglutinin-esterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hemagglutinin-esterase

Related Entries With Identical Sequence