SMTL ID : 3ku3.1

Crystal structure of a H2N2 influenza virus hemagglutinin, avian like

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)(Non-functional Binders)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.166, T.168, W.237, T.239 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain B: E.147, N.150, N.154, T.156 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:E.147 Hydrogen bonds: B:E.147 NAG-NAG.6: 4 residues within 4Å: Chain C: N.166, T.168, W.237, T.239 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain D: E.147, N.150, N.154, T.156 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:E.147 Hydrogen bonds: D:E.147 NAG-NAG.11: 4 residues within 4Å: Chain E: N.166, T.168, W.237, T.239 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 4 residues within 4Å: Chain F: E.147, N.150, N.154, T.156 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:E.147 Hydrogen bonds: F:E.147

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.3: 2 residues within 4Å: Chain A: K.17, N.25 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.17, A:N.25 NAG.8: 2 residues within 4Å: Chain C: K.17, N.25 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.17, C:N.25 NAG.13: 2 residues within 4Å: Chain E: K.17, N.25 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:K.17, E:N.25

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)(Non-covalent)

EDO.4: 5 residues within 4Å: Chain A: L.119, P.120, R.123, W.124, G.163 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.120 EDO.9: 5 residues within 4Å: Chain C: L.119, P.120, R.123, W.124, G.163 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:P.120 EDO.14: 5 residues within 4Å: Chain E: L.119, P.120, R.123, W.124, G.163 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:P.120

3 x PEG: DI(HYDROXYETHYL)ETHER(Post Translational Modification)

PEG.5: 6 residues within 4Å: Chain A: C.6, I.324 Chain B: W.14, H.25, N.135, C.137 No protein-ligand interaction detected (PLIP) PEG.10: 6 residues within 4Å: Chain C: C.6, I.324 Chain D: W.14, H.25, N.135, C.137 No protein-ligand interaction detected (PLIP) PEG.15: 6 residues within 4Å: Chain E: C.6, I.324 Chain F: W.14, H.25, N.135, C.137 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Xu, R. et al., Structure, receptor binding, and antigenicity of influenza virus hemagglutinins from the 1957 H2N2 pandemic. J.Virol. (2010)

Release Date

2010-01-19

Peptides

Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

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