- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 5 residues within 4Å:- Chain A: H.125, F.127, G.197, T.198
- Ligands: EDO.3
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.198
- Water bridges: A:G.197, A:G.197
EDO.3: 4 residues within 4Å:- Chain A: F.127, F.196, T.217
- Ligands: EDO.2
No protein-ligand interaction detected (PLIP)EDO.6: 5 residues within 4Å:- Chain C: H.125, F.127, F.196, G.197, T.198
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain B- Water bridges: C:G.197, C:R.259, B:I.211
EDO.8: 5 residues within 4Å:- Chain D: H.125, F.127, F.196, G.197, T.198
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:H.125
- Water bridges: D:G.197, D:G.197
EDO.10: 5 residues within 4Å:- Chain E: H.125, F.127, F.196, G.197, T.198
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain E- Water bridges: D:I.211, E:G.197
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Neu, U. et al., Structure-function analysis of the human JC polyomavirus establishes the LSTc pentasaccharide as a functional receptor motif. Cell Host Microbe (2010)
- Release Date
- 2010-11-17
- Peptides
- Major capsid protein VP1: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Neu, U. et al., Structure-function analysis of the human JC polyomavirus establishes the LSTc pentasaccharide as a functional receptor motif. Cell Host Microbe (2010)
- Release Date
- 2010-11-17
- Peptides
- Major capsid protein VP1: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E