SMTL ID : 4g9n.1

Crystal structure of the Rhizoctonia solani agglutinin in complex with N'-acetyl-galactosamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

3 x NGA: 2-acetamido-2-deoxy-beta-D-galactopyranose(Non-covalent)

NGA.1: 10 residues within 4Å: Chain A: D.22, L.23, W.24, R.25, Q.35, Y.37, H.40, N.44, Q.45, E.121 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.22, A:W.24, A:R.25, A:Q.35, A:H.40, A:N.44, A:Q.45, A:E.121 Water bridges: A:Y.37 NGA.2: 7 residues within 4Å: Chain A: S.78, D.112, E.115, S.116, I.125, Y.127, N.134 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.112, A:E.115, A:N.134 Water bridges: A:E.115, A:E.115, A:T.132 NGA.3: 10 residues within 4Å: Chain B: D.22, L.23, W.24, R.25, Q.35, Y.37, H.40, N.44, Q.45, E.121 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.22, B:W.24, B:R.25, B:Q.35, B:H.40, B:N.44, B:Q.45 Water bridges: B:H.40

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Skamnaki, V.T. et al., Structural analysis of the Rhizoctonia solani agglutinin reveals a domain-swapping dimeric assembly. Febs J. (2013)

Release Date

2013-06-05

Peptides

agglutinin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

agglutinin

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