SMTL ID : 4j2s.1

Macrolepiota procera ricin B-like lectin (MPL) in complex with Di-LacNAc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x MAG- GAL: beta-D-galactopyranose-(1-4)-methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside(Non-covalent)

MAG-GAL.1: 10 residues within 4Å: Chain A: D.22, L.23, S.24, G.25, E.26, I.32, Y.34, H.37, N.41, Q.42 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.22, A:S.24, A:G.25, A:H.37, A:N.41 Hydrophobic interactions: A:E.26

1 x BAM: BENZAMIDINE(Non-covalent)

BAM.2: 6 residues within 4Å: Chain A: Q.3, V.4, W.53, I.87, R.89, F.97 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.4, A:W.53, A:I.87 Hydrogen bonds: A:Q.3, A:Q.3, A:R.89 Water bridges: A:V.4 pi-Stacking: A:F.97

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Renko, M. et al., Macrolepiota procera ricin B-like lectin (MPL) in complex with Di-LacNAc. To be Published

Release Date

2013-11-20

Peptides

Ricin B-like lectin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ricin B-like lectin

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