SMTL ID : 4mq0.1

Crystal structure of Parkia biglobosa seed lectin (PBL) in complex with methyl alpha D-mannopyranoside

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

6 x MMA: methyl alpha-D-mannopyranoside(Non-covalent)

MMA.1: 7 residues within 4Å: Chain A: G.15, G.16, I.92, G.136, Y.137, Y.138, D.140 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.16, A:G.136, A:Y.137, A:Y.138, A:Y.138 Water bridges: A:G.15 MMA.2: 7 residues within 4Å: Chain A: G.309, G.310, F.387, G.430, D.431, Y.432, D.434 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.310, A:D.431, A:Y.432, A:Y.432 Water bridges: A:G.309 MMA.3: 8 residues within 4Å: Chain A: A.163, G.164, D.165, F.238, G.281, Y.282, Y.283, D.285 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.164, A:D.165, A:D.165, A:Y.282, A:Y.283, A:Y.283 Water bridges: A:A.163 MMA.4: 7 residues within 4Å: Chain B: G.15, G.16, I.92, G.136, Y.137, Y.138, D.140 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.16, B:G.136, B:Y.137, B:Y.138, B:Y.138 Water bridges: B:G.15 MMA.5: 7 residues within 4Å: Chain B: G.309, G.310, F.387, G.430, D.431, Y.432, D.434 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.310, B:D.431, B:Y.432, B:Y.432 Water bridges: B:G.309 MMA.6: 8 residues within 4Å: Chain B: A.163, G.164, D.165, F.238, G.281, Y.282, Y.283, D.285 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.164, B:D.165, B:D.165, B:Y.282, B:Y.283, B:Y.283 Water bridges: B:A.163

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Teixeira, C.S. et al., Crystal structure of Parkia biglobosa seed lectin (PBL) in complex with methyl alpha D-mannopyranoside. To be Published

Release Date

2014-12-17

Peptides

Parkia biglobosa lectin (PBL): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Parkia biglobosa lectin (PBL)