SMTL ID : 4oiz.1 (2 other biounits)

Structure, interactions and evolutionary implications of a domain-swapped lectin dimer from Mycobacterium smegmatis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-dimer

Ligands

3 x MMA: methyl alpha-D-mannopyranoside(Non-covalent)

MMA.1: 8 residues within 4Å: Chain B: Q.29, D.31, N.33, V.35, Y.37, A.42, S.45, N.49 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.29, B:D.31, B:N.33, B:Y.37, B:Y.37, B:S.45, B:S.45 MMA.2: 6 residues within 4Å: Chain A: P.72, K.79 Chain B: Q.59, D.61, N.63, Y.67 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.59, B:Q.59, B:D.61, B:N.63, B:Y.67 Salt bridges: A:K.79 MMA.3: 7 residues within 4Å: Chain B: Q.89, D.91, N.93, V.95, Y.97, P.102, S.105 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.89, B:D.91, B:N.93, B:Y.97, B:S.105, B:S.105

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Patra, D. et al., Structure, interactions and evolutionary implications of a domain-swapped lectin dimer from Mycobacterium smegmatis. Glycobiology (2014)

Release Date

2014-07-23

Peptides

LysM domain protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LysM domain protein

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