- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 5 residues within 4Å:- Chain A: E.8, D.10, D.19, P.20, H.24
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.8, A:D.10, A:D.19, A:H.24, H2O.1
MN.8: 5 residues within 4Å:- Chain B: E.8, D.10, D.19, P.20, H.24
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.8, B:D.10, B:D.19, B:H.24, H2O.4
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: T.44, G.45, K.200, S.201
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.201
SO4.4: 4 residues within 4Å:- Chain A: Q.135, F.147, D.149, S.150
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.150, A:S.150, A:S.150
SO4.9: 4 residues within 4Å:- Chain B: T.44, G.45, K.200, S.201
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.201
SO4.10: 4 residues within 4Å:- Chain B: Q.135, F.147, D.149, S.150
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.150, B:S.150, B:S.150
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x XMM: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside(Non-covalent)
XMM.6: 5 residues within 4Å:- Chain A: A.58, K.59, D.78, V.79, D.80
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:K.59, A:K.59, A:D.78
- Hydrogen bonds: A:D.80
XMM.12: 5 residues within 4Å:- Chain B: A.58, K.59, D.78, V.79, D.80
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:K.59, B:K.59, B:D.78
- Hydrogen bonds: B:D.80
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Zamora-Caballero, S. et al., Quaternary structure of Dioclea grandiflora lectin assessed by equilibrium sedimentation and crystallographic analysis of recombinant mutants. Febs Lett. (2015)
- Release Date
- 2015-07-22
- Peptides
- Lectin alpha chain: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x XMM: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Zamora-Caballero, S. et al., Quaternary structure of Dioclea grandiflora lectin assessed by equilibrium sedimentation and crystallographic analysis of recombinant mutants. Febs Lett. (2015)
- Release Date
- 2015-07-22
- Peptides
- Lectin alpha chain: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A