- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.27 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLA- FUC- A2G: alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)(Non-covalent)
EDO.3: 3 residues within 4Å:- Chain A: H.277, Y.281, M.306
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:M.306
EDO.4: 8 residues within 4Å:- Chain A: T.10, V.11, E.12, F.253, I.285, P.286, P.287, G.289
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:V.11, A:E.12, A:G.289
- Water bridges: A:T.10, A:T.10
EDO.5: 6 residues within 4Å:- Chain A: L.49, L.50, G.51, T.53, I.94, L.98
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.53
- Water bridges: A:L.49, A:G.51, A:G.51
EDO.6: 6 residues within 4Å:- Chain A: L.49, Q.54, L.55, L.98, Y.238
- Chain B: E.13
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.13
EDO.7: 10 residues within 4Å:- Chain A: S.15, S.56, A.57, Q.231, E.232
- Chain B: S.15, S.56, A.57, Q.231, E.232
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:A.57, B:A.57
- Water bridges: A:E.232
EDO.8: 7 residues within 4Å:- Chain A: L.262, F.263, Y.281, L.283, V.284, I.285, M.306
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.284
EDO.10: 6 residues within 4Å:- Chain B: L.49, L.50, G.51, T.53, I.94, L.98
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.53
- Water bridges: B:L.49, B:G.51
- 1 x FLC: CITRATE ANION(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Singh, B.K. et al., Four decades of structural evolution of GII.4 norovirus. To be published
- Release Date
- 2017-04-05
- Peptides
- VP1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.27 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLA- FUC- A2G: alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)(Non-covalent)
- 1 x FLC: CITRATE ANION(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Singh, B.K. et al., Four decades of structural evolution of GII.4 norovirus. To be published
- Release Date
- 2017-04-05
- Peptides
- VP1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B