SMTL ID : 5jm1.1 (1 other biounit)

Structure of tetrameric jacalin complexed with a trisaccharide, Gal alpha-(1,3) Gal beta-(1,4) Gal

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-2-2-mer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: S.69, G.70, Y.71, T.85, P.95 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.69, A:T.85 EDO.2: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.99, A:T.99 EDO.3: 2 residues within 4Å: Chain A: P.61, S.62 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain C: G.50, F.51, T.52, P.53 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain C: A.8, Y.130 Chain D: S.6, Q.7, T.8 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:Q.7, C:Y.130 Water bridges: D:T.8

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 1 residues within 4Å: Chain C: K.55 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.55 Water bridges: C:K.55

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Abhinav, K.V. et al., Effect of linkage on the location of reducing and nonreducing sugars bound to jacalin. IUBMB Life (2016)

Release Date

2016-12-14

Peptides

Agglutinin alpha chain: AC
Agglutinin beta-3 chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Agglutinin alpha chain

Agglutinin beta-3 chain

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