- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 6 x NA: SODIUM ION(Non-functional Binders)
- 1 x MLI: MALONATE ION(Non-functional Binders)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
NAG.8: 9 residues within 4Å:- Chain A: D.159, Q.164, G.165, W.166, H.171, G.190, E.191, F.195
- Ligands: NDG.9
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:W.166
- Hydrogen bonds: A:D.159, A:Q.164, A:W.166, A:E.191
- Water bridges: A:N.192
NAG.10: 8 residues within 4Å:- Chain A: N.46, G.52, G.53, W.54, H.59, G.78, E.79, W.83
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:W.54
- Hydrogen bonds: A:N.46, A:N.46, A:G.52, A:W.54, A:E.79
- Water bridges: A:D.80, A:D.80, A:G.81
NAG.11: 8 residues within 4Å:- Chain A: D.270, S.275, G.276, W.277, H.282, G.301, D.302, Y.306
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.270, A:S.275, A:W.277, A:D.302, A:Y.306
- Water bridges: A:A.303
NAG.12: 8 residues within 4Å:- Chain A: N.214, G.220, G.221, W.222, H.227, G.246, G.247, Y.251
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:W.222
- Hydrogen bonds: A:N.214, A:N.214, A:G.220, A:W.222, A:G.247, A:Y.251
- Water bridges: A:A.248, A:A.248
NAG.13: 8 residues within 4Å:- Chain A: N.325, Q.330, G.331, W.332, H.337, G.356, E.357, W.361
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:W.332
- Hydrogen bonds: A:N.325, A:N.325, A:Q.330, A:W.332, A:E.357, A:N.358
- Water bridges: A:Q.330, A:N.358, A:N.358
NAG.14: 10 residues within 4Å:- Chain A: N.103, G.109, G.110, W.111, H.116, G.135, E.136, L.140, T.153
- Ligands: NDG.15
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:W.111
- Hydrogen bonds: A:N.103, A:N.103, A:G.109, A:W.111, A:E.136
- Water bridges: A:A.137
- 2 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)
NDG.9: 9 residues within 4Å:- Chain A: D.159, Q.164, G.165, W.166, H.171, G.190, E.191, F.195
- Ligands: NAG.8
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:W.166
- Hydrogen bonds: A:D.159, A:Q.164, A:Q.164, A:W.166, A:E.191
- Water bridges: A:N.192
NDG.15: 10 residues within 4Å:- Chain A: N.103, G.109, G.110, W.111, H.116, G.135, E.136, L.140, T.153
- Ligands: NAG.14
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:W.111
- Hydrogen bonds: A:N.103, A:N.103, A:G.109, A:W.111, A:E.136
- Water bridges: A:G.109, A:A.137
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Ribeiro, J.P. et al., Biophysical characterization and structural determination of the potent cytotoxic Psathyrella asperospora lectin. Proteins (2017)
- Release Date
- 2017-02-22
- Peptides
- GlcNAc specific lectin: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 6 x NA: SODIUM ION(Non-functional Binders)
- 1 x MLI: MALONATE ION(Non-functional Binders)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 2 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Ribeiro, J.P. et al., Biophysical characterization and structural determination of the potent cytotoxic Psathyrella asperospora lectin. Proteins (2017)
- Release Date
- 2017-02-22
- Peptides
- GlcNAc specific lectin: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A