SMTL ID : 5v6f.1

Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae bound to Mannotriose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose(Non-covalent)

BMA-MAN-MAN.1: 14 residues within 4Å: Chain A: S.29, G.30, F.31, A.32, D.34, T.51, N.52, G.53, G.54, Y.75, W.77, W.129, L.130 Ligands: SO4.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.51, A:G.30, A:F.31, A:A.32, A:D.34, A:T.51, A:G.53, A:G.54, A:Y.75 Water bridges: A:T.51, A:W.77

2 x SO4: SULFATE ION(Non-covalent)

SO4.2: 2 residues within 4Å: Ligands: BMA-MAN-MAN.1, BMA-MAN-MAN.1 No protein-ligand interaction detected (PLIP) SO4.3: 3 residues within 4Å: Chain A: S.104, N.105, K.106 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.105, A:K.106 Water bridges: A:K.106, A:K.106 Salt bridges: A:K.106

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

De, S. et al., Structural basis of mammalian glycan targeting by Vibrio cholerae cytolysin and biofilm proteins. PLoS Pathog. (2018)

Release Date

2018-01-17

Peptides

Hemolysin-related protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hemolysin-related protein

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