5xfi.1 | SWISS-MODEL Template Library

SMTL ID : 5xfi.1

Crystal structure of Calsepa lectin in complex with biantennary N-glycan

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.65 Å
Oligo State
homo-dimer
Ligands
2 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- NAG: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
4 x SO4: SULFATE ION(Non-covalent)(Non-functional Binders)
2 x EDO: 1,2-ETHANEDIOL(Non-covalent)(Non-functional Binders)
2 x BEZ: BENZOIC ACID(Non-covalent)(Non-functional Binders)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Nagae, M. et al., Distinct roles for each N-glycan branch interacting with mannose-binding type Jacalin-related lectins Orysata and Calsepa. Glycobiology (2017)
Release Date
2017-10-18
Peptides
Lectin: AB
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B