SMTL ID : 5zv5.1

P domain of GII.17-2014/15 complexed with A-trisaccharide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x GLA- FUC- A2G: alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose(Non-covalent)(Non-functional Binders)

GLA-FUC-A2G.1: 7 residues within 4Å: Chain A: S.126, T.127, R.128, D.157 Chain B: G.221, G.222, Y.223 10 PLIP interactions: 2 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:Y.223 Hydrogen bonds: B:G.222, A:T.127, A:R.128, A:R.128, A:D.157 Water bridges: A:D.157, A:D.157, A:Q.159, A:Q.159 GLA-FUC-A2G.2: 8 residues within 4Å: Chain A: G.221, G.222, Y.223 Chain B: S.126, T.127, R.128, D.157, Q.159 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.127, B:R.128, B:R.128, B:D.157, B:Q.159, A:G.222 Water bridges: B:N.118, A:S.220 Hydrophobic interactions: A:Y.223

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Qian, Y. et al., Structural Adaptations of Norovirus GII.17/13/21 Lineage through Two Distinct Evolutionary Paths. J. Virol. (2019)

Release Date

2018-10-03

Peptides

VP1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

VP1

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