SMTL ID : 6lf2.1

SeviL bound to asialo-GM1 saccharide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x BGC- GAL- NGA- GAL: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-NGA-GAL.1: 9 residues within 4Å: Chain A: F.24, N.26, R.29, D.31, F.35, Y.40, D.41, D.42, Q.43 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.31, A:D.31, A:D.31 Hydrogen bonds: A:N.26, A:D.41, A:D.41, A:D.42, A:N.26, A:R.29, A:R.29, A:Q.43 BGC-GAL-NGA-GAL.2: 8 residues within 4Å: Chain B: F.24, N.26, R.29, F.35, Y.40, D.41, D.42, Q.43 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.26, B:D.41, B:D.42, B:N.26, B:R.29, B:R.29, B:Q.43 Water bridges: B:N.26, B:R.29, B:R.29, B:Y.40

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Kamata, K. et al., The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata. Sci Rep (2020)

Release Date

2020-12-02

Peptides

SeviL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SeviL

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