- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x ACT: ACETATE ION(Non-functional Binders)
- 8 x BGC: beta-D-glucopyranose(Non-covalent)
BGC.3: 10 residues within 4Å:- Chain A: N.89, R.93, E.95, H.107, W.109, Q.121, Q.157, H.161, G.163, W.165
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:N.89, A:R.93, A:R.93, A:E.95, A:H.107, A:Q.157, A:G.163, A:W.165
- Water bridges: A:R.93, A:Q.121, A:Q.121
BGC.6: 9 residues within 4Å:- Chain A: N.184, R.188, E.190, H.202, W.204, Q.253, H.257, G.259, W.261
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:N.184, A:N.184, A:R.188, A:R.188, A:H.202, A:Q.253, A:G.259, A:W.261
- Water bridges: A:R.188
BGC.8: 9 residues within 4Å:- Chain A: T.232, R.236, E.238, H.250, W.252, L.285, Q.301, S.306, W.309
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.250, A:Q.301, A:W.309
- Water bridges: A:R.236
- Salt bridges: A:R.236
BGC.10: 7 residues within 4Å:- Chain A: N.280, R.284, E.286, H.298, W.300, Q.349, W.354
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.280, A:N.280, A:R.284, A:R.284, A:H.298, A:Q.349, A:W.354
- Water bridges: A:R.284
BGC.15: 10 residues within 4Å:- Chain B: N.89, R.93, E.95, H.107, W.109, Q.121, Q.157, H.161, G.163, W.165
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:N.89, B:R.93, B:R.93, B:E.95, B:H.107, B:Q.157, B:G.163, B:W.165, B:W.165
- Water bridges: B:R.93, B:Q.121, B:Q.121
BGC.18: 9 residues within 4Å:- Chain B: N.184, R.188, E.190, H.202, W.204, Q.253, H.257, G.259, W.261
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:N.184, B:N.184, B:R.188, B:R.188, B:H.202, B:Q.253, B:G.259, B:W.261, B:W.261
- Water bridges: B:R.188
BGC.20: 9 residues within 4Å:- Chain B: T.232, R.236, E.238, H.250, W.252, L.285, Q.301, S.306, W.309
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:H.250, B:Q.301, B:W.309, B:W.309
- Water bridges: B:R.236
- Salt bridges: B:R.236
BGC.22: 7 residues within 4Å:- Chain B: N.280, R.284, E.286, H.298, W.300, Q.349, W.354
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:N.280, B:N.280, B:R.284, B:R.284, B:H.298, B:Q.349, B:W.354, B:W.354
- Water bridges: B:R.284
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.12: 2 residues within 4Å:- Chain A: S.36, V.85
5 PLIP interactions:5 interactions with chain A- Water bridges: A:V.37, A:V.37, A:K.83, A:K.83, A:V.86
NA.24: 2 residues within 4Å:- Chain B: S.36, V.85
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.36
- Water bridges: B:V.37, B:K.83, B:K.83
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Fujdiarova, E. et al., Heptabladed beta-propeller lectins PLL2 and PHL from Photorhabdus spp. recognize O-methylated sugars and influence the host immune system. Febs J. (2020)
- Release Date
- 2020-07-01
- Peptides
- lectin PLL2 from Photorhabdus laumondii: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x ACT: ACETATE ION(Non-functional Binders)
- 8 x BGC: beta-D-glucopyranose(Non-covalent)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Fujdiarova, E. et al., Heptabladed beta-propeller lectins PLL2 and PHL from Photorhabdus spp. recognize O-methylated sugars and influence the host immune system. Febs J. (2020)
- Release Date
- 2020-07-01
- Peptides
- lectin PLL2 from Photorhabdus laumondii: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A