- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x QWJ: 6-S-(prop-2-yn-1-yl)-6-thio-beta-D-glucopyranosyl 1-thio-beta-D-galactopyranoside
- 4 x MN: MANGANESE (II) ION
MN.2: 4 residues within 4Å:- Chain A: E.121, D.123, D.132, H.137
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.123, A:D.132, A:H.137, H2O.1, H2O.2
MN.5: 4 residues within 4Å:- Chain B: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.121, B:D.123, B:D.132, B:H.137, H2O.7, H2O.8
MN.7: 4 residues within 4Å:- Chain C: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.121, C:D.123, C:D.132, C:H.137, H2O.12, H2O.13
MN.10: 4 residues within 4Å:- Chain D: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.121, D:D.123, D:D.132, D:H.137, H2O.16, H2O.18
- 4 x CA: CALCIUM ION
CA.3: 4 residues within 4Å:- Chain A: D.123, Y.125, N.127, D.132
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.123, A:Y.125, A:D.132, H2O.1, H2O.3
CA.6: 4 residues within 4Å:- Chain B: D.123, Y.125, N.127, D.132
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.123, B:Y.125, B:D.132, H2O.7, H2O.7
CA.8: 4 residues within 4Å:- Chain C: D.123, Y.125, N.127, D.132
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.123, C:Y.125, C:D.132, H2O.13, H2O.13
CA.11: 4 residues within 4Å:- Chain D: D.123, Y.125, N.127, D.132
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.123, D:Y.125, D:D.132, H2O.17, H2O.18
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Cagnoni, A.J. et al., Crystal structures of peanut lectin in the presence of synthetic beta-N- and beta-S-galactosides disclose evidence for the recognition of different glycomimetic ligands. Acta Crystallogr D Struct Biol (2020)
- Release Date
- 2020-10-28
- Peptides
- Galactose-binding lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x QWJ: 6-S-(prop-2-yn-1-yl)-6-thio-beta-D-glucopyranosyl 1-thio-beta-D-galactopyranoside
- 4 x MN: MANGANESE (II) ION
- 4 x CA: CALCIUM ION
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Cagnoni, A.J. et al., Crystal structures of peanut lectin in the presence of synthetic beta-N- and beta-S-galactosides disclose evidence for the recognition of different glycomimetic ligands. Acta Crystallogr D Struct Biol (2020)
- Release Date
- 2020-10-28
- Peptides
- Galactose-binding lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D