SMTL ID : 7dc4.1 (1 other biounit)

Crystal structure of glycan-bound Pseudomonas taiwanensis lectin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.95 Å

Oligo State

monomer

Ligands

2 x BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose

BMA-MAN-MAN-MAN-MAN.1: 9 residues within 4Å: Chain A: R.28, E.56, G.57, P.58, I.59, Q.76, W.77, G.78, G.79 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.28, A:R.28, A:R.28 Water bridges: A:R.28 BMA-MAN-MAN-MAN-MAN.2: 9 residues within 4Å: Chain A: Q.9, W.10, G.11, G.12, R.95, E.123, G.124, P.125, I.126 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.10, A:R.95, A:R.95, A:R.95

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: H.18, P.19 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matoba, Y. et al., Lectins engineered to favor a glycan-binding conformation have enhanced antiviral activity. J.Biol.Chem. (2021)

Release Date

2021-04-28

Peptides

Lectin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lectin

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