SMTL ID : 7oln.1

Structure of the N-terminal domain of BC2L-C lectin (1-131) in complex with Lewis y antigen

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-trimer

Ligands

3 x GAL- NAG- GAL- FUC- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose

GAL-NAG-GAL-FUC-FUC.1: 9 residues within 4Å: Chain A: F.57, T.77, K.81, R.114 Chain B: Y.51, E.84, T.86, G.87, R.88 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:R.88, A:Y.61, A:Y.61, B:S.85 Hydrogen bonds: A:R.114, A:R.114 GAL-NAG-GAL-FUC-FUC.2: 9 residues within 4Å: Chain B: F.57, T.77, K.81, R.114 Chain C: Y.51, E.84, T.86, G.87, R.88 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:R.114, B:R.114 Water bridges: B:Y.61, B:Y.61, C:R.88, C:S.85 GAL-NAG-GAL-FUC-FUC.3: 9 residues within 4Å: Chain A: Y.51, E.84, T.86, G.87, R.88 Chain C: F.57, T.77, K.81, R.114 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Water bridges: A:R.88, C:Y.61, C:Y.61, A:S.85 Hydrogen bonds: C:R.114, C:R.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bermeo, R. et al., Structure of the N-terminal domain of BC2L-C lectin (1-131) in complex with Lewis y antigen. To Be Published

Release Date

2022-06-01

Peptides

Lectin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
AAA

C
AAA

Lectin

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