1YYN structure in UniLectin3D

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Comments

complexed with GD3 oligosaccharide

Jayaraman S, Eswaramoorthy S, Kumaran D, Swaminathan S Common binding site for disialyllactose and tri-peptide in C-fragment of tetanus neurotoxin Proteins 2005

Matching protein

P04958 in UniLectin

Available structures

1A8D : no ligand
1AF9 : no ligand
1D0H : GalNAc + SO4
1DFQ : NeuAc
1DIW : Gal
1DLL : bGal14Glc
1FV2 : GT1b ganglioside analogue
1FV3 : GT1b ganglioside analogue
1YXW : no ligand
1YYN : aNeuAc28aNeuAc23bGal14Glc
3HMY : aNeuAc28aNeuAc28aNeuAc
3HN1 : aNeuAc28aNeuAc and Gal
5N0B : no ligand
5N0C : no ligand

Related proteins
> 50% identity

Ligand

Glycan composition

IUPAC condensed

GlycoCT

RES
1b:x-dglc-HEX-1:5
2b:b-dgal-HEX-1:5
3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
4s:n-acetyl
5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
6s:n-acetyl
LIN
1:1o(4+1)2d
2:2o(3+2)3d
3:3d(5+1)4n
4:3o(8+2)5d
5:5d(5+1)6n

PubMed DOI RCSB.ORG PDBeGlyTouCan (glycan information)SwissModel (ligand interactions)Glyconnect and SugarBind glycan superstructure(s)Uniprot Sugarbind lectin

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