- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-functional Binders)(Non-covalent)
- 4 x GAL- NAG- GAL- NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)]beta-D-galactopyranose(Non-covalent)(Post Translational Modification)
GAL-NAG-GAL-NAG-GAL.2: 8 residues within 4Å:- Chain A: D.88, G.106, F.128, N.130, G.213, L.214, D.215, I.216
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.215, A:D.88, A:G.106, A:N.130, A:N.130, A:L.214
GAL-NAG-GAL-NAG-GAL.6: 9 residues within 4Å:- Chain A: P.135
- Chain B: D.88, G.106, F.128, N.130, G.213, L.214, D.215, I.216
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.215, B:D.88, B:G.106, B:N.130, B:N.130, B:L.214
GAL-NAG-GAL-NAG-GAL.10: 8 residues within 4Å:- Chain C: D.88, G.106, F.128, N.130, G.213, L.214, D.215, I.216
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:D.215, C:D.88, C:G.106, C:N.130, C:N.130, C:L.214
GAL-NAG-GAL-NAG-GAL.14: 9 residues within 4Å:- Chain C: P.135
- Chain D: D.88, G.106, F.128, N.130, G.213, L.214, D.215, I.216
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:D.215, D:D.88, D:G.106, D:N.130, D:N.130, D:L.214
- 4 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)
MN.3: 5 residues within 4Å:- Chain A: E.124, D.126, D.133, H.138
- Ligands: CA.4
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.124, A:D.126, A:D.133, A:H.138, H2O.1, H2O.1
MN.7: 5 residues within 4Å:- Chain B: E.124, D.126, D.133, H.138
- Ligands: CA.8
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.124, B:D.126, B:D.133, B:H.138, H2O.1, H2O.1
MN.11: 5 residues within 4Å:- Chain C: E.124, D.126, D.133, H.138
- Ligands: CA.12
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.124, C:D.126, C:D.133, C:H.138, H2O.1, H2O.1
MN.15: 5 residues within 4Å:- Chain D: E.124, D.126, D.133, H.138
- Ligands: CA.16
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.124, D:D.126, D:D.133, D:H.138, H2O.2, H2O.2
- 4 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.4: 5 residues within 4Å:- Chain A: D.126, F.128, N.130, D.133
- Ligands: MN.3
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.126, A:F.128, A:D.133, H2O.1, H2O.1
CA.8: 5 residues within 4Å:- Chain B: D.126, F.128, N.130, D.133
- Ligands: MN.7
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.126, B:F.128, B:D.133, H2O.1, H2O.1
CA.12: 5 residues within 4Å:- Chain C: D.126, F.128, N.130, D.133
- Ligands: MN.11
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.126, C:F.128, C:D.133, H2O.1, H2O.1
CA.16: 5 residues within 4Å:- Chain D: D.126, F.128, N.130, D.133
- Ligands: MN.15
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.126, D:F.128, D:D.133, H2O.2, H2O.2
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Buts, L. et al., Weak protein-protein interactions in lectins: the crystal structure of a vegetative lectin from the legume Dolichos biflorus. J.Mol.Biol. (2001)
- Release Date
- 2001-06-13
- Peptides
- LECTIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-functional Binders)(Non-covalent)
- 4 x GAL- NAG- GAL- NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)]beta-D-galactopyranose(Non-covalent)(Post Translational Modification)
- 4 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Buts, L. et al., Weak protein-protein interactions in lectins: the crystal structure of a vegetative lectin from the legume Dolichos biflorus. J.Mol.Biol. (2001)
- Release Date
- 2001-06-13
- Peptides
- LECTIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A