- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x GLC- GAL: beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)
- 2 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)
BGC-GAL.2: 11 residues within 4Å:- Chain B: D.80, A.82, D.83, G.103, G.104, Y.125, N.127, S.211, L.212, G.213, G.214
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.80, B:D.83, B:G.104, B:N.127, B:S.211, B:S.211, B:L.212, B:G.213, B:G.214
- Water bridges: B:G.102, B:E.129, B:E.129, B:E.129
BGC-GAL.3: 11 residues within 4Å:- Chain C: D.80, A.82, D.83, G.103, G.104, Y.125, N.127, S.211, L.212, G.213, G.214
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:D.80, C:D.83, C:G.104, C:N.127, C:S.211, C:S.211, C:L.212, C:G.213, C:G.214
- Water bridges: C:G.102
- 4 x CA: CALCIUM ION(Non-covalent)
CA.5: 4 residues within 4Å:- Chain A: D.123, Y.125, N.127, D.132
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.123, A:Y.125, A:D.132, H2O.1, H2O.1
CA.7: 4 residues within 4Å:- Chain B: D.123, Y.125, N.127, D.132
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.123, B:Y.125, B:D.132, H2O.4, H2O.4
CA.9: 4 residues within 4Å:- Chain C: D.123, Y.125, N.127, D.132
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.123, C:Y.125, C:D.132, H2O.9, H2O.9
CA.11: 4 residues within 4Å:- Chain D: D.123, Y.125, N.127, D.132
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.123, D:Y.125, D:D.132, H2O.12, H2O.12
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.6: 4 residues within 4Å:- Chain A: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.121, A:D.123, A:D.132, A:H.137, H2O.1, H2O.1
MN.8: 4 residues within 4Å:- Chain B: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.121, B:D.123, B:D.132, B:H.137, H2O.4, H2O.4
MN.10: 4 residues within 4Å:- Chain C: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.121, C:D.123, C:D.132, C:H.137, H2O.9, H2O.9
MN.12: 4 residues within 4Å:- Chain D: E.121, D.123, D.132, H.137
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.121, D:D.123, D:D.132, D:H.137, H2O.12, H2O.12
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Kundhavai Natchiar, S. et al., Structural plasticity of peanut lectin: an X-ray analysis involving variation in pH, ligand binding and crystal structure. Acta Crystallogr.,Sect.D (2004)
- Release Date
- 2004-02-10
- Peptides
- Galactose-binding lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x GLC- GAL: beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)
- 2 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Kundhavai Natchiar, S. et al., Structural plasticity of peanut lectin: an X-ray analysis involving variation in pH, ligand binding and crystal structure. Acta Crystallogr.,Sect.D (2004)
- Release Date
- 2004-02-10
- Peptides
- Galactose-binding lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D