- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GQ1- GLC: alpha-D-glucopyranose-(1-6)-4-O-sulfo-alpha-D-glucopyranose(Non-covalent)(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.3: 5 residues within 4Å:- Chain A: E.96, N.98, E.103, D.115
- Ligands: GQ1-GLC.1
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.96, A:E.103, A:D.115, A:D.115
CA.5: 5 residues within 4Å:- Chain B: E.96, N.98, E.103, D.115
- Ligands: GQ1-GLC.2
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.96, B:E.103, B:D.115, B:D.115
- 6 x SO4: SULFATE ION(Non-covalent)(Non-functional Binders)
SO4.4: 7 residues within 4Å:- Chain A: R.4, L.5, C.6, F.12
- Chain B: F.20, K.22, K.60
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:F.20, A:L.5, A:C.6
- Salt bridges: B:K.22, B:K.60
- Water bridges: A:F.12
SO4.6: 7 residues within 4Å:- Chain A: K.22, K.60
- Chain B: C.3, R.4, L.5, C.6, F.12
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Salt bridges: A:K.22, A:K.60
- Hydrogen bonds: B:L.5, B:C.6
- Water bridges: B:F.12
SO4.7: 7 residues within 4Å:- Chain B: L.14, N.16, Y.18, N.45, S.46, E.49, K.127
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.14, B:N.16, B:Y.18
- Salt bridges: B:K.127
SO4.8: 4 residues within 4Å:- Chain B: S.46, D.47, E.48
- Ligands: SO4.9
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.48, B:E.48
SO4.9: 6 residues within 4Å:- Chain B: N.45, S.46, D.47, R.87, F.88
- Ligands: SO4.8
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.47
- Water bridges: B:R.87
- Salt bridges: B:R.87
SO4.10: 5 residues within 4Å:- Chain B: F.19, S.21, K.22, S.23, W.124
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.22, B:S.23
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Silva-Martin, N. et al., Structural Basis for Selective Recognition of Endogenous and Microbial Polysaccharides by Macrophage Receptor Sign-R1. Structure (2014)
- Release Date
- 2014-10-15
- Peptides
- CD209 ANTIGEN-LIKE PROTEIN B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GQ1- GLC: alpha-D-glucopyranose-(1-6)-4-O-sulfo-alpha-D-glucopyranose(Non-covalent)(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Silva-Martin, N. et al., Structural Basis for Selective Recognition of Endogenous and Microbial Polysaccharides by Macrophage Receptor Sign-R1. Structure (2014)
- Release Date
- 2014-10-15
- Peptides
- CD209 ANTIGEN-LIKE PROTEIN B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B