SMTL ID : 4z2s.1 (1 other biounit)

The crystal structure of Sclerotium Rolfsii lectin variant 2 (SSR2) in complex with N-acetyl-glucosamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 1 residues within 4Å: Chain A: Y.73 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.3, A:Y.73, A:Y.73

1 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG.2: 11 residues within 4Å: Chain A: D.78, I.79, V.80, T.81, N.82, N.101, R.102, Y.113, V.115, K.116 Ligands: NAG.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.115 Hydrogen bonds: A:D.78, A:T.81, A:N.101, A:R.102, A:Y.113 Water bridges: A:R.102 Salt bridges: A:R.102

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.3: 11 residues within 4Å: Chain A: D.78, I.79, V.80, T.81, N.82, N.101, R.102, Y.113, V.115, K.116 Ligands: NDG.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.115 Hydrogen bonds: A:T.81, A:Y.96, A:N.101, A:R.102, A:Y.113 Water bridges: A:R.102, A:R.102, A:Y.113 Salt bridges: A:R.102

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Peppa, V.I. et al., Molecular Cloning, Carbohydrate Specificity and the Crystal Structure of Two Sclerotium rolfsii Lectin Variants. Molecules (2015)

Release Date

2015-07-01

Peptides

Sclerotium Rolfsii lectin variant: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sclerotium Rolfsii lectin variant

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