- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x BMA: beta-D-mannopyranose(Non-covalent)
BMA.2: 11 residues within 4Å:- Chain A: D.22, I.23, L.28, K.43, H.47, L.48, H.52, E.59, F.126, A.127, G.128
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:D.22, A:K.43, A:H.52, A:E.59, A:E.59, A:A.127, A:G.128
- Water bridges: A:E.59
- Salt bridges: A:K.43, A:H.52
BMA.6: 11 residues within 4Å:- Chain B: D.22, I.23, L.28, K.43, H.47, L.48, H.52, E.59, F.126, A.127, G.128
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:D.22, B:K.43, B:H.52, B:E.59, B:E.59, B:A.127, B:G.128
- Salt bridges: B:K.43, B:H.52
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 8 residues within 4Å:- Chain A: G.42, K.43, P.54, I.111, P.112, C.113, M.124, G.125
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:P.112, H2O.2
MG.4: 5 residues within 4Å:- Chain A: G.90, N.91, Y.140, K.141, V.142
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:K.141, H2O.4, H2O.4
MG.7: 8 residues within 4Å:- Chain B: G.42, K.43, P.54, I.111, P.112, C.113, M.124, G.125
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:P.112, H2O.11
MG.8: 5 residues within 4Å:- Chain B: G.90, N.91, Y.140, K.141, V.142
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:K.141, H2O.13, H2O.13
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Jiang, S. et al., DM9 Domain Containing Protein Functions As a Pattern Recognition Receptor with Broad Microbial Recognition Spectrum. Front Immunol (2017)
- Release Date
- 2017-12-27
- Peptides
- Natterin-3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x BMA: beta-D-mannopyranose(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Jiang, S. et al., DM9 Domain Containing Protein Functions As a Pattern Recognition Receptor with Broad Microbial Recognition Spectrum. Front Immunol (2017)
- Release Date
- 2017-12-27
- Peptides
- Natterin-3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A