- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x ACT: ACETATE ION(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 7 residues within 4Å:- Chain A: N.184, R.188, E.190, H.202, W.204, Q.253, W.261
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.184, A:R.188, A:R.188, A:H.202, A:Q.253
EDO.19: 7 residues within 4Å:- Chain B: N.184, R.188, E.190, H.202, W.204, Q.253, W.261
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.184, B:R.188, B:R.188, B:H.202, B:Q.253, B:W.261
- 2 x RM4: beta-L-rhamnopyranose(Non-covalent)
RM4.7: 7 residues within 4Å:- Chain A: N.280, R.284, E.286, H.298, W.300, Q.349, W.354
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.280, A:E.286, A:E.286, A:H.298, A:Q.349
- Salt bridges: A:R.284
RM4.21: 7 residues within 4Å:- Chain B: N.280, R.284, E.286, H.298, W.300, Q.349, W.354
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:N.280, B:E.286, B:E.286, B:H.298, B:H.298, B:Q.349
- Salt bridges: B:R.284
- 12 x NA: SODIUM ION(Non-functional Binders)
NA.9: 6 residues within 4Å:- Chain A: N.89, T.90, V.135, G.139, I.141, H.161
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.90, A:T.90, A:H.161
NA.10: 6 residues within 4Å:- Chain A: N.136, T.137, G.187, Q.205, P.208, D.209
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.137, A:D.209, A:D.209, A:D.209
NA.11: 6 residues within 4Å:- Chain A: G.43, Q.61, P.64, H.65, D.328, A.329
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:I.45, A:Q.61, A:Q.61, A:A.329
NA.12: 8 residues within 4Å:- Chain A: E.33, I.34, V.35, S.321, A.322, P.323, T.324, F.336
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:I.34, A:V.35, A:S.321, A:F.336
NA.13: 6 residues within 4Å:- Chain A: T.40, S.41, I.88, G.92, T.113, N.114
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.41, A:S.41, A:N.114
NA.14: 4 residues within 4Å:- Chain A: G.67, E.334, N.346, W.348
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.61, A:G.67, A:N.346
NA.23: 6 residues within 4Å:- Chain B: N.89, T.90, V.135, G.139, I.141, H.161
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.89, B:T.90, B:H.161
NA.24: 6 residues within 4Å:- Chain B: N.136, T.137, G.187, Q.205, P.208, D.209
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.137, B:Q.205, B:D.209
NA.25: 6 residues within 4Å:- Chain B: G.43, Q.61, P.64, H.65, D.328, A.329
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:I.45, B:Q.61, B:Q.61, B:A.329
NA.26: 8 residues within 4Å:- Chain B: E.33, I.34, V.35, S.321, A.322, P.323, T.324, F.336
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:I.34, B:V.35, B:S.321, B:A.322, B:T.324
NA.27: 6 residues within 4Å:- Chain B: T.40, S.41, I.88, G.92, T.113, N.114
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.41, B:N.114, B:N.114
NA.28: 4 residues within 4Å:- Chain B: G.67, E.334, N.346, W.348
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.61, B:G.67, B:E.334
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Fujdiarova, E. et al., Heptabladed beta-propeller lectins PLL2 and PHL from Photorhabdus spp. recognize O-methylated sugars and influence the host immune system. Febs J. (2020)
- Release Date
- 2020-07-01
- Peptides
- lectin PLL2 from Photorhabdus laumondii: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x ACT: ACETATE ION(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x RM4: beta-L-rhamnopyranose(Non-covalent)
- 12 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Fujdiarova, E. et al., Heptabladed beta-propeller lectins PLL2 and PHL from Photorhabdus spp. recognize O-methylated sugars and influence the host immune system. Febs J. (2020)
- Release Date
- 2020-07-01
- Peptides
- lectin PLL2 from Photorhabdus laumondii: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A