- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 8 x BGC: beta-D-glucopyranose(Non-covalent)
BGC.2: 10 residues within 4Å:- Chain A: N.87, R.91, E.93, H.105, W.107, Q.155, H.159, S.160, G.161, W.163
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:N.87, A:R.91, A:R.91, A:E.93, A:H.105, A:Q.155, A:G.161, A:W.163, A:W.163
- Water bridges: A:H.159
BGC.4: 9 residues within 4Å:- Chain A: N.182, R.186, E.188, H.200, W.202, Q.251, H.255, G.257, W.259
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:N.182, A:N.182, A:R.186, A:R.186, A:H.200, A:Q.251, A:G.257, A:W.259, A:W.259
BGC.5: 8 residues within 4Å:- Chain A: T.230, R.234, E.236, H.248, W.250, Q.299, S.304, W.307
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:E.236, A:H.248, A:Q.299, A:W.307, A:W.307
- Water bridges: A:R.234, A:R.234, A:W.250, A:S.304
- Salt bridges: A:R.234
BGC.6: 7 residues within 4Å:- Chain A: N.278, R.282, E.284, H.296, W.298, Q.347, W.352
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.278, A:N.278, A:R.282, A:R.282, A:H.296, A:Q.347, A:W.352, A:W.352
BGC.20: 10 residues within 4Å:- Chain B: N.87, R.91, E.93, H.105, W.107, Q.155, H.159, S.160, G.161, W.163
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:N.87, B:R.91, B:R.91, B:E.93, B:H.105, B:Q.155, B:G.161, B:W.163
- Water bridges: B:H.159, B:H.159
BGC.22: 9 residues within 4Å:- Chain B: N.182, R.186, E.188, H.200, W.202, Q.251, H.255, G.257, W.259
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:N.182, B:N.182, B:R.186, B:R.186, B:H.200, B:Q.251, B:G.257, B:W.259
BGC.23: 8 residues within 4Å:- Chain B: T.230, R.234, E.236, H.248, W.250, Q.299, S.304, W.307
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:E.236, B:H.248, B:Q.299, B:W.307
- Water bridges: B:R.234, B:R.234, B:W.250, B:S.304
- Salt bridges: B:R.234
BGC.24: 7 residues within 4Å:- Chain B: N.278, R.282, E.284, H.296, W.298, Q.347, W.352
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:N.278, B:N.278, B:R.282, B:R.282, B:H.296, B:Q.347, B:W.352
- 8 x NA: SODIUM ION(Non-functional Binders)
NA.8: 2 residues within 4Å:- Chain A: T.178, V.179
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.178, A:T.178, A:V.179
NA.9: 6 residues within 4Å:- Chain A: N.134, T.135, G.185, Q.203, P.206, D.207
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.135, A:D.207, A:D.207
NA.10: 2 residues within 4Å:- Chain A: N.37, T.38
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.37
NA.11: 1 residues within 4Å:- Chain A: K.81
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.81
- Water bridges: A:E.31, A:K.81
NA.26: 2 residues within 4Å:- Chain B: T.178, V.179
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.178, B:V.179
- Water bridges: B:T.178, B:H.180
NA.27: 6 residues within 4Å:- Chain B: N.134, T.135, G.185, Q.203, P.206, D.207
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.135, B:Q.203, B:D.207, B:D.207
NA.28: 2 residues within 4Å:- Chain B: N.37, T.38
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.37
NA.29: 1 residues within 4Å:- Chain B: K.81
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.81
- Water bridges: B:K.81
- 14 x CL: CHLORIDE ION(Non-functional Binders)
CL.12: 6 residues within 4Å:- Chain A: G.49, T.50, D.51, K.52, A.53, W.55
Ligand excluded by PLIPCL.13: 2 residues within 4Å:- Chain A: S.213, W.214
Ligand excluded by PLIPCL.14: 2 residues within 4Å:- Chain A: N.117, W.118
Ligand excluded by PLIPCL.15: 3 residues within 4Å:- Chain A: N.281
- Chain B: N.37, A.327
Ligand excluded by PLIPCL.16: 2 residues within 4Å:- Chain A: R.240, T.270
Ligand excluded by PLIPCL.17: 3 residues within 4Å:- Chain A: S.116, N.117, Q.119
Ligand excluded by PLIPCL.18: 3 residues within 4Å:- Chain A: R.336, I.363, D.364
Ligand excluded by PLIPCL.30: 6 residues within 4Å:- Chain B: G.49, T.50, D.51, K.52, A.53, W.55
Ligand excluded by PLIPCL.31: 2 residues within 4Å:- Chain B: S.213, W.214
Ligand excluded by PLIPCL.32: 2 residues within 4Å:- Chain B: N.117, W.118
Ligand excluded by PLIPCL.33: 3 residues within 4Å:- Chain A: N.37, A.327
- Chain B: N.281
Ligand excluded by PLIPCL.34: 2 residues within 4Å:- Chain B: R.240, T.270
Ligand excluded by PLIPCL.35: 3 residues within 4Å:- Chain B: S.116, N.117, Q.119
Ligand excluded by PLIPCL.36: 3 residues within 4Å:- Chain B: R.336, I.363, D.364
Ligand excluded by PLIP- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Fujdiarova, E. et al., Heptabladed beta-propeller lectins PLL2 and PHL from Photorhabdus spp. recognize O-methylated sugars and influence the host immune system. Febs J. (2020)
- Release Date
- 2020-07-01
- Peptides
- Lectin PHL: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 8 x BGC: beta-D-glucopyranose(Non-covalent)
- 8 x NA: SODIUM ION(Non-functional Binders)
- 14 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Fujdiarova, E. et al., Heptabladed beta-propeller lectins PLL2 and PHL from Photorhabdus spp. recognize O-methylated sugars and influence the host immune system. Febs J. (2020)
- Release Date
- 2020-07-01
- Peptides
- Lectin PHL: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A