- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-heptamer
- Ligands
- 3 x BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose
- 3 x EDO: 1,2-ETHANEDIOL
EDO.4: 5 residues within 4Å:- Chain A: Y.37, L.39, H.41, K.60, D.130
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.60, A:K.60
EDO.7: 5 residues within 4Å:- Chain C: K.30, E.64
- Chain F: V.9, G.10, Y.82
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain F- Hydrogen bonds: C:K.30, F:G.10
EDO.8: 6 residues within 4Å:- Chain C: V.9, G.10, Y.82
- Chain D: K.30, E.64, I.66
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:K.30, C:G.10
- Water bridges: D:K.30, D:E.44
- 8 x GOL: GLYCEROL
GOL.5: 8 residues within 4Å:- Chain A: K.30, E.64, I.66
- Chain E: T.7, E.8, V.9, G.10, Y.82
5 PLIP interactions:3 interactions with chain E, 2 interactions with chain A- Hydrogen bonds: E:G.10, E:G.10, E:Y.82, A:K.30, A:K.30
GOL.6: 6 residues within 4Å:- Chain C: G.77, S.78, V.79, K.94, L.95, T.96
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.94
GOL.9: 5 residues within 4Å:- Chain D: V.79, K.94, M.104, F.108
- Ligands: GOL.10
No protein-ligand interaction detected (PLIP)GOL.10: 4 residues within 4Å:- Chain D: G.77, V.79, T.96
- Ligands: GOL.9
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:S.78, D:T.96
GOL.11: 7 residues within 4Å:- Chain D: T.7, E.8, G.10, Y.82
- Chain E: K.30, E.64, I.66
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain D- Hydrogen bonds: E:K.30, D:G.10
GOL.12: 5 residues within 4Å:- Chain E: G.77, S.78, V.79, K.94, T.96
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:G.77, E:T.96
GOL.13: 8 residues within 4Å:- Chain F: K.30, E.64, I.66
- Chain G: T.7, E.8, V.9, G.10, Y.82
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain G- Hydrogen bonds: F:K.30, F:K.30, G:G.10
GOL.14: 1 residues within 4Å:- Chain G: K.140
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Sivaji, N. et al., Structural and related studies on Mevo lectin from Methanococcus voltae A3. The first thorough characterisation of an archeal lectin and its interactions. Glycobiology (2020)
- Release Date
- 2021-02-03
- Peptides
- lectin: ABCDEFG
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
GC
AD
DE
EF
FG
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-heptamer
- Ligands
- 3 x BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose
- 3 x EDO: 1,2-ETHANEDIOL
- 8 x GOL: GLYCEROL
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Sivaji, N. et al., Structural and related studies on Mevo lectin from Methanococcus voltae A3. The first thorough characterisation of an archeal lectin and its interactions. Glycobiology (2020)
- Release Date
- 2021-02-03
- Peptides
- lectin: ABCDEFG
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
GC
AD
DE
EF
FG
C