SMTL ID : 7eqt.1

Crystal structure of capsid P domain of norovirus GI.3 DSV complexed with Gala1-3Galb1-4Glc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

1 x BGC- GAL- GLA: alpha-D-galactopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-GLA.1: 7 residues within 4Å: Chain A: D.114, H.116, S.170, P.171, V.172, S.173, Q.175 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.175, A:Q.175, A:H.116, A:S.170, A:S.170, A:Q.175, A:Q.175 Water bridges: A:Q.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Structural Insight into Terminal Galactose Recognition by Two Non-HBGA Binding GI.3 Noroviruses. J.Virol. (2022)

Release Date

2022-05-04

Peptides

Capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Capsid protein

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