- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 4 residues within 4Å:- Chain A: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.10, A:Y.12, A:D.19, H2O.1, H2O.1
CA.6: 4 residues within 4Å:- Chain B: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.10, B:Y.12, B:D.19, H2O.4, H2O.5
CA.10: 4 residues within 4Å:- Chain C: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.10, C:Y.12, C:D.19, H2O.8, H2O.8
CA.14: 4 residues within 4Å:- Chain D: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.10, D:Y.12, D:D.19, H2O.11, H2O.11
- 4 x MMA: methyl alpha-D-mannopyranoside(Non-covalent)
MMA.3: 9 residues within 4Å:- Chain A: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, M.228
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.98, A:L.99, A:Y.100, A:Y.100, A:M.228
- Water bridges: A:G.227
MMA.7: 9 residues within 4Å:- Chain B: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, M.228
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:G.98, B:L.99, B:Y.100, B:Y.100, B:M.228
- Water bridges: B:G.227
MMA.11: 9 residues within 4Å:- Chain C: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, M.228
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:N.14, C:G.98, C:L.99, C:Y.100, C:Y.100, C:M.228
- Water bridges: C:G.227
MMA.15: 9 residues within 4Å:- Chain D: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, M.228
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:N.14, D:G.98, D:L.99, D:Y.100, D:Y.100, D:M.228
- Water bridges: D:G.227
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 6 residues within 4Å:- Chain A: I.17, M.228, L.229, P.234, D.235, A.236
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.236
GOL.8: 6 residues within 4Å:- Chain B: I.17, M.228, L.229, P.234, D.235, A.236
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:A.236
GOL.12: 6 residues within 4Å:- Chain C: I.17, M.228, L.229, P.234, D.235, A.236
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:A.236
GOL.16: 6 residues within 4Å:- Chain D: I.17, M.228, L.229, P.234, D.235, A.236
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:A.236
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lossio, C.F. et al., Lectin from Canavalia villosa seeds: A glucose/mannose-specific protein and a new tool for inflammation studies. Int J Biol Macromol (2017)
- Release Date
- 2023-09-27
- Peptides
- Canavalia villosa lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MMA: methyl alpha-D-mannopyranoside(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lossio, C.F. et al., Lectin from Canavalia villosa seeds: A glucose/mannose-specific protein and a new tool for inflammation studies. Int J Biol Macromol (2017)
- Release Date
- 2023-09-27
- Peptides
- Canavalia villosa lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A