5AVA structure in UniLectin3D

Mol* PDB structure viewer

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Comments

Complexed with bissected N-glycan

Nagae, M., Kanagawa, M., Morita-Matsumoto, K., Hanashima, S., Kizuka, Y., Taniguchi, N., Yamaguchi, Y. Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins Sci. Rep. 2016

Matching protein

P05088 in UniLectin

Available structures

3WCR : no ligand
3WCS : bGal14bGlcNAc12Man
3WOG : bGlcNAc12Man
5AVA : bGlcNAc12aMan13(bGlcNAc14)(bGa

Related proteins
> 50% identity

Ligand

Glycan composition

IUPAC condensed

GlycoCT

RES
1b:x-dglc-HEX-1:5
2s:n-acetyl
3b:b-dman-HEX-1:5
4b:a-dman-HEX-1:5
5b:b-dglc-HEX-1:5
6s:n-acetyl
7b:b-dglc-HEX-1:5
8s:n-acetyl
9b:a-dman-HEX-1:5
10b:b-dglc-HEX-1:5
11s:n-acetyl
12b:b-dgal-HEX-1:5
LIN
1:1d(2+1)2n
2:1o(4+1)3d
3:3o(3+1)4d
4:4o(2+1)5d
5:5d(2+1)6n
6:3o(4+1)7d
7:7d(2+1)8n
8:3o(6+1)9d
9:9o(2+1)10d
10:10d(2+1)11n
11:10o(4+1)12d

PubMed DOI Glycan Array CFG RCSB.ORG PDBeGlyTouCan (glycan information)SwissModel (ligand interactions)Glyconnect and SugarBind glycan superstructure(s)Uniprot GlyConnect lectin

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